MMTSB
Tool Set Documentation

Difference between revisions of "qscore.pl"

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; -help : usage information
 
; -help : usage information
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; -all : show short-range, medium-range, and long-range Q-scores separately
  
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== Examples ==
  
== Examples ==
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<mmtsbToolExample cmd="qscore.pl" set="/apps/mmtsb/bench/qscore.pl-test/test1"></mmtsbToolExample>
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<mmtsbToolExample cmd="qscore.pl" set="/apps/mmtsb/bench/qscore.pl-test/test2"></mmtsbToolExample>

Latest revision as of 02:40, 28 July 2009

Usage

usage:   qscore.pl [options] refPDB [cmpPDB]
options: [-all]

Show source


Description

This utility calculates Q scores of a given PDB structure with respect to a reference.

Options

-help 
usage information
-all 
show short-range, medium-range, and long-range Q-scores separately

Examples

qscore.pl 1vii.exp.pdb 1vii.sample.1.pdb
calculates the overall Q-score of 1vii.sample.1.pdb with respect to the reference structure 1vii.exp.pdb

0.179517


qscore.pl -all 1vii.exp.pdb 1vii.sample.1.pdb
calculate short-, medium-, and long-range Q-scores of 1vii.sample.1.pdb with respect to the reference structure 1vii.exp.pdb

all:     0.179517
 short:  0.551687
 medium: 0.193963
 long:   0.034506