usage: mindist.pl residue1 residue2 pdbFile
This script calculates the minimum distance of heavy atoms between a pair of residues in a protein structure. The residue numbers and the protein structure are expected as command line arguments. The distance in Ångstrom is written to standard output.
- usage information
mindist.pl 10 18 1vii.exp.pdb
calculates the minimum inter-residue distance for the given residue pair in the given structure