MMTSB
Tool Set Documentation

Difference between revisions of "Main Page"

From MMTSB
Jump to: navigation, search
Line 1: Line 1:
 
== Structure preparation ==
 
== Structure preparation ==
  
<TT>[[convpdb.pl]]</TT>|blabla
+
* <TT>[[convpdb.pl]]</TT>
<TT>[[complete.pl]]</TT>
+
* <TT>[[complete.pl]]</TT>
<TT>[[mutate.pl]]</TT>
+
* <TT>[[mutate.pl]]</TT>
<TT>[[mutateNA.pl]]</TT>
+
* <TT>[[mutateNA.pl]]</TT>
  
 
== Structure analysis ==
 
== Structure analysis ==

Revision as of 02:03, 11 August 2006

Structure preparation

Structure analysis

centerOfMass.pl cluster.pl contact.pl countIntCont.pl dihed.pl lsqfit.pl mindist.pl qscore.pl rgyr.pl rms.pl vicinity.pl

All-Atom Modeling

enerAmber.pl enerCHARMM.pl analyzeCHARMM.pl equiCHARMM.pl genPSF.pl mdAmber.pl mdCHARMM.pl minAmber.pl minCHARMM.pl nmaCHARMM.pl pbCHARMM.pl pdb2traj.pl processDCD.pl scalarCHARMM.pl

SICHO Lattice Modeling

genchain.pl geninput.pl checkchain.pl genrestr.pl genseq.pl hlamc.pl latticeener.pl latticesim.pl rebuild.pl xtracttra.pl

Replica Exchange Sampling

aarex.pl aarexAmaber.pl latrex.pl gorex.pl hlamcrex.pl readArchive.pl rexanalysis.pl rexinfo.pl rexserver.pl writeArchive.pl



Ensemble Computing

bestcluster.pl calcprop.pl checkin.pl enscluster.pl enscut.pl enseval.pl ensfiles.pl enslatsim.pl ensmin.pl ensrun.pl getprop.pl showcluster.pl jobserver.pl setprop.pl


Structure Prediction

buildModel.pl psiblast.pl psipred.pl