Difference between revisions of "showcluster.pl"

Latest revision as of 12:50, 30 July 2009

Usage

usage:   showcluster.pl [options] tag
options: [-dir workdir]
         [-ctag tag]

Show source

Description

This script lists clusters that have been previously generated from ensemble structures with enscluster.pl. The ensemble tag is required as argument and the ensemble directory may be given with -dir.

The output lists for each cluster the tag, the number of structure elements and the number of subclusters.

Options

-help: usage information
-dir workdir: ensemble directory
-ctag alttag: read cluster data from alttag.cluster file

Examples

showcluster.pl -dir data sample
lists clusters generated previously with enscluster.pl.

t               16     3
  t.1              3     0
  t.2             11     2
    t.2.1            1     0
    t.2.2           10     3
      t.2.2.1          8     0
      t.2.2.2          1     0
      t.2.2.3          1     0
  t.3              2     0

@@ Line 7: / Line 7: @@
 This script lists clusters that have been previously generated
-from ensemble structures with <docmark>enscluster.pl</docmark>.
+from ensemble structures with [[enscluster.pl]].
 The ensemble tag is required as argument and the ensemble
 directory may be given with <B>-dir</B>.<BR>
 The output lists for each cluster the tag, the number of
 structure elements and the number of subclusters.<BR>
 == Options ==
 ; -help : usage information
+; -dir workdir : ensemble directory
+; -ctag alttag : read cluster data from <TT>alttag.cluster</TT> file
 == Examples ==
 <mmtsbToolExample cmd="showcluster.pl" set="/apps/mmtsb/bench/showcluster.pl-test/test1"></mmtsbToolExample>