MMTSB
Tool Set Documentation

countIntCont.pl

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Usage

usage:   countIntCont.pl [options] [PDBfile]
options: [-distcut num] [-chainA id] [-chainB id]
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Description

This tool counts the number of heavy-atom contacts at the interface between two chains.

Options

-help 
usage information
-distcut value 
distance cutoff to determine whether residues are in contact
-chainA id 
first chain to be analyzed
-chainB id 
second chain to be analyzed

Examples

countIntCont.pl -chainA A -chainB B 1brs.AB.pdb
determines the number of contacts between the two chains A and B of this protein complex

153 atomic contacts between chains A and B